Protein descriptions in different ontologies

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Contents

BioPax

Protein Description This description contains no information about constituent amino acids of protein. There are some disjoint restrictions.

Reactome

This is a reaction database so it doesn't contains protein definition.

SWAN Project

Contains only very simple definition of a protein:

 <rdf:Description rdf:about="Protein">
   <rdfs:label>Protein</rdfs:label>
   <rdf:type rdf:resource="rdfs:Class"/>
   <rdfs:subClassOf rdf:resource="Concept"/>
 </rdf:Description>

OBO

It also contains very simple protein definition

 [Term]
 id: CHEBI:36080
 name: proteins
 alt_id: CHEBI:14911
 alt_id: CHEBI:13677
 def: "Biological macromolecules minimally consisting of one polypeptide chain synthesized at theribosome." []
 synonym: "protein" EXACT [:IntEnz]
 synonym: "a protein" EXACT [:IntEnz]
 is_a: CHEBI:33695

National Center for Biomedical Ontology

It uses previous ontologies

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